- #Imagej software reference mac os
- #Imagej software reference install
- #Imagej software reference update
- #Imagej software reference code
THIS SOFTWARE IS BEING PROVIDED "AS IS", WITHOUT ANY EXPRESS OR IMPLIED WARRANTY. Any for profit use of this software is expressly forbidden without first obtaining the explicit consent of the author.
Permission to use, copy, modify, and distribute this software for any purpose without fee is hereby granted, provided that this entire notice is included in all copies of any software which is or includes a copy or modification of this software and in all copies of the supporting documentation for such software. Li, "The image stabilizer plugin for ImageJ,", February, 2008.Ĭopyright (C) 2008-2009 Kang Li. The plugin will prompt you for an output directory to store the stabilized image sequence.Ġ: Optimized for speed using gradient pyramidsĢ: Performed further speed optimizations and bug fixesĤ: Added support for affine transformationĢ: Added support for macro recordering (thanks to Christophe Leterrier at )ġ: Added support for logging transformation coefficients (can be reapplied to another stack using Image Stabilizer Log Applier)ġ: The stabilization process can be interrupted by pressing 'ESC' or by closing the imageĠ: Fixed a runtime error when the user does not select the Log_Transformation_Coefficients checkbox (thanks to Nico Stuurman at UCSF)Ģ: Fixed a bug that affected 32-bit float input images (thanks to Derek Bailey) In general, please cite these projectstheir long-term future depends on it Thank you for your support. On Windows XP, you can get better looking text in menus, dialogs, text windows and the status bar by activating Clear Type, a form of sub-pixel antialiasing : Right click on a blank area of the desktop and choose 'Properties'. If journal reference limits interfere, the plugin-specific publications should take precedence. Hint: To process very large image stacks, import the stack with the "Use Virtual Stack" option enabled. The general paper of ImageJ distribution(s) usede.g., if you used Fiji, cite the Fiji paper.
#Imagej software reference update
Once a slice is aligned, the "template" will be updated on the fly using the formula: new_template = a * old_template + (1 - a) * newly_aligned_slice, where "a" is the "template update coefficient" that can be adjusted when the plugin is run. The estimation and alignment are performed using the Lucas-Kanade algorithm It estimates the geometrical transformation needed to best align each of the other slices with the "template". It uses the currently shown slice in an image stack as the initial reference, or "template"
#Imagej software reference code
The source code for ImageJ is freely available.Error creating thumbnail: Unable to save thumbnail to destination How does it work?
#Imagej software reference mac os
Downloadable distributions are available for Microsoft Windows, Mac OS, Mac OS X, Linux, and the Sharp Zaurus PDA. ImageJ can be run as an online applet, a downloadable application, or on any computer with a Java 5 or later virtual machine. ImageJ's plugin architecture and built in development environment has made it a popular platform for teaching image processing. User-written plugins make it possible to solve many image processing and analysis problems, from three-dimensional live-cell imaging, to radiological image processing, multiple imaging system data comparisons to automated hematology systems.
This software was developed for assisting users in achieving the physical characterization of X-ray digital systems and some image quality checks.
#Imagej software reference install
To install this plugin, unzip the archive, copy the file COQ.jar to the ImageJ plugins folder, and restart ImageJ. Custom acquisition, analysis and processing plugins can be developed using ImageJ's built-in editor and a Java compiler. The download of the ImageJ plugin (.jar) can be done here. ImageJ was designed with an open architecture that provides extensibility via Java plugins and recordable macros. ImageJ is a public domain, Java-based image processing program developed at the National Institutes of Health.
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